Public microbial resources and genome accessions.
Selected microbial genomes and accessions generated or used through the Probiotic Genomics & AI research programme.
01 / NCBI-ACCESSIONED RESOURCES
A compact, public data record.
Each record identifies a microbial strain and links it to a public sequence accession for further scientific inspection.
| Organism / strain | Accession | Public record |
|---|---|---|
| Saccharomyces cerevisiae NIGAB Y1 | JBHEFK000000000.1 | Open NCBI |
| Lactiplantibacillus plantarum NIGAB | NZ_JBGOGG000000000 | Open NCBI |
| Lactiplantibacillus plantarum HF43 | NZ_JALGYB000000000 | Open NCBI |
| Pediococcus pentosaceus SPARC2 | NZ_JAHQJK000000000 | Open NCBI |
| Bacillus sp. SPARC3 | NZ_JAHQJL000000000 | Open NCBI |
| Enterococcus faecium | JAVBZR000000000 | Open NCBI |
| Enterococcus faecalis | NZ_JAHQJJ000000000 | Open NCBI |
PROBIOTIC GENOMICS TOOL
Probiotic Genome Classifier.
A genome-based research tool that accepts bacterial FASTA files, extracts normalized 5-mer frequencies and uses an XGBoost model to estimate whether a genome is likely probiotic or non-probiotic.
745genomes in dataset
1,0245-mer features
94.63%held-out accuracy
02 / REPRODUCIBLE WORKFLOW
From isolate to public resource.
The genomic resources page provides a visible bridge between laboratory strain work, sequence records and downstream computational analysis.
Isolate
Phenotype
WGS / NGS
Safety & function
AI ranking
Validation
Product
Verification rule
If an accession has been superseded, link to the current NCBI record and retain the original identifier in the description.